BME230: Computational Genomics

*****COURSES ARE SUBJECT TO CHANGE*****

Genomics databases: analysis of high-throughput genomics datasets; BLAST and related sequence comparison methods; pairwise alignment of biosequences by dynamic programming; statistical methods to discover common motifs in biosequences; multiple alignment and database search using motif models; constructing phylogenetic trees; hidden Markov models for finding genes, etc.; discriminative methods for analysis of bioinformatics data, neural networks, and support vector machines; locating genes and predicting gene function, including introduction to linkage analysis and disease association studies using SNPs; and modeling DNA and RNA structures. Prerequisite(s): course 205; concurrent enrollment in course 230L, 296, or 297 is required. Enrollment restricted to graduate students; undergraduates may enroll if they have completed course 205, Computer Science 101, and BIOC 100A. D. Haussler, T. Lowe, J. Stuart

5 Credits

YearFallWinterSpringSummer
2016-17
  • Section 01
    Richard E Green (regreen)
    Joshua M Stuart (jstuart)
    David Haussler (haussler)
2015-16
  • Section 01
    David Haussler (haussler)
    Joshua M Stuart (jstuart)
    Richard E Green (regreen)
2014-15
  • Section 01
    Richard E Green (regreen)
    David Haussler (haussler)
    Joshua M Stuart (jstuart)
2013-14
  • Section 01
    Richard E Green (regreen)
    David Haussler (haussler)
    Joshua M Stuart (jstuart)
2012-13
  • Section 01
    David Haussler (haussler)
    Richard E Green (regreen)
2011-12
  • Section 01
    Richard E Green (regreen)
    David Haussler (haussler)
    Joshua M Stuart (jstuart)
2010-11
  • Section 01
    David Haussler (haussler)
    Joshua M Stuart (jstuart)
2009-10
  • Section 01
    David Haussler (haussler)
    Joshua M Stuart (jstuart)
2008-09
  • Section 01
    David Haussler (haussler)
    Joshua M Stuart (jstuart)
2007-08
  • Section 01
    David Haussler (haussler)
    Joshua M Stuart (jstuart)
2006-07
  • Section 01
    David Haussler (haussler)
    Joshua M Stuart (jstuart)
2005-06
2004-05
2003-04

While the information on this web site is usually the most up to date, in the event of a discrepancy please contact your adviser to confirm which information is correct.